Friday, March 06, 2009

Exon/Intron Statistics in Human Genome

Data from: http://www.bioinfo.de/isb/2004/04/0032/main.html#tab-1

Table 1: Exon - intron distributions for human genome
Chr # Total # genes Total # exons Total # introns Max # exons/gene Chromosome size (determined) Avg # of exons/gene Avg length (bp) Std dev. Total length (bp) Shortest (bp) Longest (bp)
exon intron exon intron exon intron exon intron gene exon intron gene
1 2514 22345 19831 107 226828929 8.89 167.01 4736.52 229.37 14268.19 3731870 93929919 2 1 78 8449 476158 980961
2 1354 12506 11152 148 238349289 9.24 163.98 5883.23 226.88 17012.24 2050855 65609873 2 1 90 7572 483412 1897544
3 1394 13517 12123 118 195073306 9.70 164.06 6375.63 224.21 21019.22 2217700 77291760 2 1 150 6654 497816 990999
4 926 8299 7373 85 187239983 8.96 174.78 7168.94 266.64 19497.08 1450541 52856617 2 53 132 6255 494708 1467842
5 1186 9946 8760 90 177696509 8.39 189.50 7277.28 332.86 21277.20 1884777 63748970 2 1 150 6574 370360 930401
6 1306 11406 10100 145 169212327 8.73 173.62 5961.61 253.56 18967.75 1980397 60212251 2 31 159 7152 469892 1377570
7 2508 23045 20537 82 310210944 9.19 167.87 6703.87 271.88 20177.41 3868769 137677396 2 1 14 11923 458139 1641567
8 908 7823 6915 86 143297300 8.62 171.16 7354.15 258.43 21384.09 1339052 50853964 2 54 84 7308 453268 2055833
9 1033 8941 7908 72 117790386 8.66 170.66 5351.68 253.19 14121.26 1525926 42321074 2 33 105 6598 276306 865661
10 1017 10273 9256 69 132016990 10.10 153.79 6412.91 219.97 20271.48 1579898 59357955 2 52 105 7812 482575 1727184
11 1567 12459 10892 87 130908954 7.95 177.66 4341.42 237.03 15362.46 2213526 47286795 3 1 87 6183 437543 1463302
12 1299 12399 11100 89 129826379 9.55 158.07 4570.21 192.23 12979.23 1959945 50729293 2 30 81 6324 328545 1248678
13 426 3784 3358 83 95749578 8.88 183.47 7351.75 396.79 19082.4 694268 24687182 2 37 279 11555 317646 1175762
14 854 6837 6106 114 87191216 8.01 176.24 5653.70 276.66 19076.38 1204982 33826109 2 51 51 11304 479079 1210740
15 843 8106 7263 104 81992482 9.62 169.79 4660.70 271.38 11542.05 1376321 33850721 2 1 168 9527 207178 620362
16 1093 9986 8893 62 79932432 9.14 166.96 3661.25 242.60 13092.99 1667340 32559472 2 1 75 8607 466049 1167938
17 1459 13179 11720 74 79376966 9.03 165.08 3193.16 215.89 9875.72 2175698 37423835 2 30 63 4786 283762 712668
18 367 3333 2966 75 74658403 9.08 174.9 7905.40 256.53 19377.24 583054 23447419 3 67 225 4721 411175 1189866
19 1609 12169 10560 106 55878340 7.56 187.31 2032.87 279.92 4741.54 2279436 21467122 2 1 81 5059 170796 298909
20 775 6492 5717 80 59424990 8.38 160.34 4403.10 215.29 13613.39 1040952 25172558 3 54 135 3738 303713 1108855
21 309 2539 2230 47 33924367 8.22 168.59 5086.89 306.51 16098.67 428056 11343761 3 74 102 5916 323563 833627
22 671 5173 4502 54 34352072 7.71 171.14 3924.83 281.85 12999.39 885356 17669584 3 42 38 6762 447252 492969
X 1048 8568 7520 79 152118949 8.18 185.33 7627.85 299.66 23527.35 1587926 57361443 2 54 129 6102 493512 2217347
Y 98 660 562 44 24649555 6.73 173.74 5288.54 255.05 19676.46 114670 2972162 3 67 228 2493 400349 681119